Table 2 |
||||
|
Bacterial RNase E/G homologues represented in the NCBI protein database |
||||
|
Phylum/Class |
Length (aa) |
Potential to form degradosome- like complex |
Organisms tested for the presence of degradosome-like complexes/Reference |
|
|
|
||||
|
Predicted based on the size of the protein |
Experimentally verified |
|||
|
|
||||
|
Actinobacteria |
463-1373 |
+ |
+ |
S. coelicolor /[55] M. tuberculosis; M. bovis /[56] |
|
Aquificae |
466-470 |
- |
- |
|
|
Bacteroidetes/Chlorobi |
503-570 |
- |
- |
|
|
Chlamydiae/Verrucomicrobia group |
510-554 |
- |
- |
|
|
Cyanobacteria |
602-808 |
- |
- |
|
|
Deferribacteres |
507 |
- |
- |
|
|
Elusimicrobia |
488 |
- |
- |
|
|
Fibrobacteres/Acidobacteria group |
511 |
- |
- |
|
|
Firmicutes |
||||
|
Bacilli |
441-615 |
- |
- |
|
|
Clostridia |
393-571 |
- |
- |
|
|
Fusobacteria |
432-458 |
- |
- |
|
|
Gemmatimonadetes |
520 |
- |
- |
|
|
Nitrospirae |
514-522 |
- |
- |
|
|
Planctomycetes |
509-588 |
- |
- |
|
|
Proteobacteria |
||||
|
Alpha |
411-1123 |
+ |
+ |
R. capsulatus/[54] C. crescentus [52] |
|
Beta |
394-1125 |
+ |
- |
|
|
Gamma |
410-1302 |
+ |
+ |
P. syringe/[50] V. angustum S14 RNase E [46] P. haloplanktis [49] |
|
Delta |
486-926 |
+ |
- |
|
|
Synergistetes |
495-547 |
- |
- |
|
|
Thermotogae |
454-481 |
- |
- |
|
|
|
||||
|
Kaberdin et al. Journal of Biomedical Science 2011 18:23 doi:10.1186/1423-0127-18-23 |
||||
